See contentstructuremenu.ini The screen shoots you are talking about must be really old, the tree menu has never been intended to show all content as long as I can remember, only containers. (try adding above 20 articles and see how useful it gets ;))
Just for reference, I found the documentation page that confused me: http://ez.no/doc/ez_publish/user_manual/4_0/the_administration_interface/the_content_structure_tab. It is not that old...
Anyway, the settings in contentstructuremenu.ini were just what I was looking for.
Regards,
frank
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