I don't know whether there is a better way in EZ 3.9, but I would just edit the the toolbar.ini and remove the blocks [Toolbar_admin_right] and [Toolbar_admin_developer]. Clear the cache and you are done.
On my version of EZ 3.9 (stable release, no RC) the search is not part of the right toolbar in the admin view, it is on the right side of the header. There is no way to remove it via some setting, you have to change the pagelayout (just add a display:none or surround the search with a condition that depends on some custom setting.
Claudia
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