Tony all content from before the upgrade is there. Its just that new/modified content doesn't show. Permissions could well be the problem, but its extremely painful to trawl through everything with no clue of what I'm looking for.
Thanks to all that replied. At the end of the day I reverted to my 3.1 backup. Next time I'll test out an upgrade on a test installation first. Looking back, I think that something went wrong with the upgrade script.
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