The rewriting bit is the "RewriteEngine On" and "RewriteRule !\.(gif|css|jpg|png|jar|js|html)$ /index.php" lines. This is whatever you want apache to assume, so in this example anything that comes in after www.site3.com will be rewritten as www.site3.com/index.php.
e.g. www.site3.com/en automatically becomes www.site3.com/index.php/en (although this won't appear in the user's browser). eZ Publish will do the rest of the translation, you can tell it how to respond to different incoming urls in /settings/override/site.ini.php.append (or whatever it was)
Hope this helps (this is all in the documentation by the way).
Regards,
James
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