first of all, you need an eZ publish installation on your server. If you don't have an existing one, you can archive and pack your whole eZ publish directory, transfer it to your server and unpack it. Of course you also need your database backup...
If you just have unpacked a plain eZ publish download file on your server, you (normally) only need to copy the changed directories in desigen (e.g. design/<yourdesign>, extension (if you created or downloaded one), settings (e.g. settings/override and settings/<all_siteaccesses>) and - if you uploaded some files/images/... var/<cachedirectory>/storage.
In both cases: Then - perhaps - you need to change some settings (normally in the different site.ini.* files) belonging to domain or site names. and perhaps you need to change the rights of the uploaded directories. (Have a look in the manual installation chapter of the documentation.) Don't forget to fill the database.
Hope I could help a little bit
Thomas
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